Documentation

Getting Started

Software

  • General
  • Bioinformatics: antiSMASH, BBMap, bedtools, BLAST, BRAT NextGen, Canu, ClonalFrameML, Databionic ESOM Tools, ExaML, FastSimBac, FastQC, HMMER, IDBA, InterProScan, Kaiju, Krona Tools, MEGAHIT, MOCAT, MOPAC, OpenThermo, pplacer, Prodigal, RAxML, SamTools, Seq-Gen, Sickle, SimBac, SPAdes, QUAST
  • Chemistry: ACES, Amber, CFOUR, GAMESS, Gaussian, Molden, Molpro, NWChem, Orca, Quantum Espresso, Siesta
  • Frameworks/Libraries: CUDA, Intel MKL, LAPACK, MPI, OpenCL, OpenMP, ScaLAPACK
  • Languages: C/C++, Fortran, Java, MATLAB*, Mathematica*, PythonR
  • Machine Learning: TensorFlow
  • Math/Statistics: MACEK, Mathematica*, R,
  • Molecular Dynamics: GROMACS, LAMMPS, NAMD
  • Physics/Engineering: Abaqus, Materials Studio, MATLAB*

* – Only available to MCSR users at the University of Mississippi

Advanced